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Collection: NCBI Viruses (Jan 2025)

All viruses from NCBI (NCBI:txid10239) as of January 2025.

Links:

Database files

Zip collections

Taxonomy files

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Complete list of database files

Files:

Download via curl using the command line

# download ncbi-viruses-2025.01.dna.k=21.sig.zip
curl -O --no-clobber https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db.new/ncbi-viruses-2025.01/ncbi-viruses-2025.01.dna.k=21.sig.zip

# download ncbi-viruses-2025.01.dna.k=31.sig.zip
curl -O --no-clobber https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db.new/ncbi-viruses-2025.01/ncbi-viruses-2025.01.dna.k=31.sig.zip

# download ncbi-viruses-2025.01.skip_m2n3.k=24.sig.zip
curl -O --no-clobber https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db.new/ncbi-viruses-2025.01/ncbi-viruses-2025.01.skip_m2n3.k=24.sig.zip

# download taxonomy file
curl -O --no-clobber https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db.new/ncbi-viruses-2025.01/ncbi-viruses.2025.01.lineages.csv

A list of all the URLs

https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db.new/ncbi-viruses-2025.01/ncbi-viruses-2025.01.dna.k=21.sig.zip
https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db.new/ncbi-viruses-2025.01/ncbi-viruses-2025.01.dna.k=31.sig.zip
https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db.new/ncbi-viruses-2025.01/ncbi-viruses-2025.01.skip_m2n3.k=24.sig.zip
https://farm.cse.ucdavis.edu/~ctbrown/sourmash-db.new/ncbi-viruses-2025.01/ncbi-viruses.2025.01.lineages.csv