All examples
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Example: create a signature by downloading and sketching a genome sequence
Example: download and search 66,000 GTDB genomes with a query genome
Example: create a metagenome signature from shotgun sequencing reads
Example: analyze a metagenome using 66,000 GTDB genomic representatives
Example: ask for an example of how to use sourmash to do something
Example: create a conda environment with the latest version of sourmash
Example: create and use an LCA database for taxonomic analysis
Example: detect potential contaminants in unassembled and uncorrected PacBio sequencing data
Example: download, sketch, and search a collection of FASTA files
Example: estimate how much of a metagenome sample can be mapped to reference genomes
Example: search collection manifests directly
Example: use genome_updater.sh and sketch fromfile to build a custom database from NCBI
Example: use sourmash tax to classify a metagenome
Example: use picklists and manifests to work with a small subset of a large database